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Next-Generation Sequencing Analysis Resources
Pre-Requisites
- Intro to R
- Introduction to Linux
  - Linux Exercise
  - Nano Tutorials
NGS Sequencing Technology and File Formats
Alignment
- Trimming with Trimmomatic
Visualization
Variant Calling
- Pre-Processing
- Variant Discovery
RNA-seq Analysis
HPC
ChipSeq analysis
De novo genome assembly
Single cell RNA sequencing
Metagenomics
- Quality Control
- Shotgun Metagenomics
  - Taxonomic Classification
  - Functional Analysis
Deep Learning using Keras

BADAS

Pheniqs
Building R Packages
Intro to Nextflow
JBrowse: Visualizing Data Quickly & Easily
Intro to ggplot
Taking it further with ggplot
Git and GitHub
Seurat: Integration and Label Transfer
Nextflow + Containerization
Containerization with Docker
Jupyter Notebook
tidyverse
Regular Expressions
Customizing Your Unix Environment

tidyverse

Posted on April 11, 2018Author mkhalfanCategories BADAS

One thought on “tidyverse”

Pingback: Intro to ggplot – NGS Analysis

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